Variant report

Variant	rs7800072
Chromosome Location	chr7:84628989-84628990
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84623761..84625708-chr7:84627565..84630528,2	K562	blood:
2	chr7:84627487..84629976-chr7:84630867..84633209,2	K562	blood:

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1016027	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10225455	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10231441	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10237102	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10244898	0.90[EUR][1000 genomes]
rs10247311	0.86[EUR][1000 genomes]
rs10256889	0.89[EUR][1000 genomes]
rs10260131	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10261725	0.85[CEU][hapmap];0.96[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10264465	0.85[EUR][1000 genomes]
rs10267189	0.89[EUR][1000 genomes]
rs10268216	0.91[EUR][1000 genomes]
rs10271823	0.91[EUR][1000 genomes]
rs10277834	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10281252	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282482	0.86[EUR][1000 genomes]
rs10486845	0.88[CEU][hapmap];0.96[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10486847	0.96[CEU][hapmap];0.85[GIH][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs11760335	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs11766179	0.87[EUR][1000 genomes]
rs11771699	0.85[EUR][1000 genomes]
rs11980498	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11980984	0.95[EUR][1000 genomes]
rs11982720	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12112643	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12113270	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12154971	0.95[EUR][1000 genomes]
rs12155292	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12707691	0.94[EUR][1000 genomes]
rs12707692	0.94[EUR][1000 genomes]
rs12707693	0.90[EUR][1000 genomes]
rs12707695	0.94[EUR][1000 genomes]
rs12707696	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13230423	0.90[EUR][1000 genomes]
rs13231019	0.93[EUR][1000 genomes]
rs13231340	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232515	0.90[EUR][1000 genomes]
rs13232613	0.90[EUR][1000 genomes]
rs13232789	0.90[EUR][1000 genomes]
rs13233871	0.94[EUR][1000 genomes]
rs13234489	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs13234914	0.94[EUR][1000 genomes]
rs13240751	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs13242253	0.84[EUR][1000 genomes]
rs13244179	0.90[EUR][1000 genomes]
rs13307855	0.92[EUR][1000 genomes]
rs1468396	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1528621	0.90[EUR][1000 genomes]
rs1534565	0.84[EUR][1000 genomes]
rs1534566	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1534572	0.87[EUR][1000 genomes]
rs16887803	0.83[CHD][hapmap]
rs17159470	0.89[EUR][1000 genomes]
rs17159549	0.82[CHD][hapmap]
rs17558957	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs17559084	0.88[CEU][hapmap];0.96[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs17559978	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17639510	0.95[EUR][1000 genomes]
rs17639600	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs1919282	0.94[EUR][1000 genomes]
rs2040954	0.94[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2040957	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2103312	0.85[CEU][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs2141415	0.90[EUR][1000 genomes]
rs2158727	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2178236	0.90[EUR][1000 genomes]
rs2190211	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2190213	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2214820	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2240393	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2286185	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286189	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2286190	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2372503	0.90[EUR][1000 genomes]
rs2372510	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2372511	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28819164	0.90[EUR][1000 genomes]
rs34004921	0.94[EUR][1000 genomes]
rs34134012	0.93[EUR][1000 genomes]
rs34462522	0.90[EUR][1000 genomes]
rs34584772	0.90[EUR][1000 genomes]
rs34931062	0.95[EUR][1000 genomes]
rs34996468	0.94[EUR][1000 genomes]
rs35003658	0.95[EUR][1000 genomes]
rs35367762	0.84[EUR][1000 genomes]
rs35449238	0.90[EUR][1000 genomes]
rs35600623	0.94[EUR][1000 genomes]
rs35826544	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35853835	0.94[EUR][1000 genomes]
rs35948002	0.83[EUR][1000 genomes]
rs36201011	0.83[EUR][1000 genomes]
rs4141132	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4560742	0.90[EUR][1000 genomes]
rs56039102	0.95[EUR][1000 genomes]
rs56227953	0.83[EUR][1000 genomes]
rs57531424	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59006756	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62472060	0.88[EUR][1000 genomes]
rs62472062	0.87[EUR][1000 genomes]
rs62472078	0.91[EUR][1000 genomes]
rs62472081	0.89[EUR][1000 genomes]
rs62472087	0.90[EUR][1000 genomes]
rs62472088	0.90[EUR][1000 genomes]
rs62472110	0.95[EUR][1000 genomes]
rs62472151	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6468010	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6959903	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962714	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6965396	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs713153	0.90[EUR][1000 genomes]
rs713154	0.94[EUR][1000 genomes]
rs71560707	0.90[EUR][1000 genomes]
rs7776699	0.90[EUR][1000 genomes]
rs7777682	0.90[EUR][1000 genomes]
rs7780675	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7788896	0.94[EUR][1000 genomes]
rs7790637	0.90[EUR][1000 genomes]
rs7790809	0.90[EUR][1000 genomes]
rs7793364	0.83[CHD][hapmap]
rs7793649	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7794144	0.90[EUR][1000 genomes]
rs7794619	0.90[EUR][1000 genomes]
rs7794920	0.94[EUR][1000 genomes]
rs7798487	0.89[EUR][1000 genomes]
rs7801626	0.90[EUR][1000 genomes]
rs7803548	0.94[EUR][1000 genomes]
rs7806400	0.84[CEU][hapmap];0.96[GIH][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap]
rs7807283	0.90[EUR][1000 genomes]
rs7809383	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9642196	0.90[EUR][1000 genomes]
rs9942642	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84625800-84630200	Weak transcription	Fetal Brain Male	brain
2	chr7:84626400-84639800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:84627000-84632200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:84627200-84632800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:84627200-84633800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:84627200-84633800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:84627200-84636800	Weak transcription	Fetal Stomach	stomach
8	chr7:84627400-84631600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:84627800-84633400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:84628000-84632000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:84628200-84630400	Strong transcription	Fetal Lung	lung
12	chr7:84628200-84630800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:84628200-84631200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:84628200-84631600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:84628600-84629000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:84628600-84629600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:84628800-84629200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr7:84628800-84629200	Enhancers	Fetal Muscle Leg	muscle
19	chr7:84628800-84631400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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