Variant report

Variant	rs36201011
Chromosome Location	chr2:67421193-67421194
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1016027	0.81[EUR][1000 genomes]
rs10225455	0.83[EUR][1000 genomes]
rs10231441	0.82[EUR][1000 genomes]
rs10231783	0.84[ASN][1000 genomes]
rs10237102	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10247311	0.81[ASN][1000 genomes]
rs10261725	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277834	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10281252	0.84[EUR][1000 genomes]
rs10486845	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11760335	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980498	0.82[EUR][1000 genomes]
rs11980984	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154971	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155292	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707691	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707692	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707695	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707696	0.81[EUR][1000 genomes]
rs13231019	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231340	0.84[EUR][1000 genomes]
rs13232789	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13233871	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234489	0.85[EUR][1000 genomes]
rs13234914	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13240751	0.81[EUR][1000 genomes]
rs13307855	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17558957	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17559084	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17639510	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17639600	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1919282	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040957	0.83[EUR][1000 genomes]
rs2240393	0.82[EUR][1000 genomes]
rs2286185	0.82[EUR][1000 genomes]
rs34004921	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34134012	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34931062	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34996468	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35003658	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35600623	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35826544	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35853835	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141132	0.82[EUR][1000 genomes]
rs56039102	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57531424	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62472060	0.87[ASN][1000 genomes]
rs62472078	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62472110	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959903	0.84[EUR][1000 genomes]
rs6962714	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6965396	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs713154	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780675	0.83[EUR][1000 genomes]
rs7788896	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7793649	0.84[EUR][1000 genomes]
rs7794920	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800072	0.83[EUR][1000 genomes]
rs7803548	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7809383	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811476	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2759058	chr2:67266707-67465662	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757805	chr2:67287279-67465662	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv428397	chr2:67287279-67465662	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
7	nsv1008421	chr2:67417384-67476219	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67396400-67422000	Weak transcription	Pancreas	Pancrea

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