Variant report
| Variant | rs10231783 |
|---|---|
| Chromosome Location | chr7:84617099-84617100 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:84609474..84613107-chr7:84613651..84618012,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000229251 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10237102 | 0.81[ASN][1000 genomes] |
| rs10261725 | 0.84[ASN][1000 genomes] |
| rs11760335 | 0.84[ASN][1000 genomes] |
| rs11980984 | 0.84[ASN][1000 genomes] |
| rs12154971 | 0.84[ASN][1000 genomes] |
| rs12155292 | 0.84[ASN][1000 genomes] |
| rs12707691 | 0.84[ASN][1000 genomes] |
| rs12707692 | 0.84[ASN][1000 genomes] |
| rs12707695 | 0.84[ASN][1000 genomes] |
| rs13231019 | 0.84[ASN][1000 genomes] |
| rs13233871 | 0.84[ASN][1000 genomes] |
| rs13234914 | 0.84[ASN][1000 genomes] |
| rs1919282 | 0.84[ASN][1000 genomes] |
| rs34004921 | 0.81[ASN][1000 genomes] |
| rs34134012 | 0.84[ASN][1000 genomes] |
| rs34996468 | 0.84[ASN][1000 genomes] |
| rs35003658 | 0.81[ASN][1000 genomes] |
| rs35600623 | 0.84[ASN][1000 genomes] |
| rs35853835 | 0.84[ASN][1000 genomes] |
| rs36201011 | 0.84[ASN][1000 genomes] |
| rs56039102 | 0.84[ASN][1000 genomes] |
| rs62472110 | 0.84[ASN][1000 genomes] |
| rs713154 | 0.84[ASN][1000 genomes] |
| rs7788896 | 0.81[ASN][1000 genomes] |
| rs7794920 | 0.84[ASN][1000 genomes] |
| rs7803548 | 0.81[ASN][1000 genomes] |
| rs7809383 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949446 | chr7:84003501-84763823 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2422324 | chr7:84530290-84944913 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
