Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1016027	0.82[CHD][hapmap]
rs10231441	0.83[CHD][hapmap]
rs10255386	1.00[MEX][hapmap]
rs10281252	0.83[CHD][hapmap]
rs17159500	1.00[MEX][hapmap]
rs17159549	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17159556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17159573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17159620	1.00[MEX][hapmap]
rs2040954	0.81[CHD][hapmap]
rs2040957	0.82[CHD][hapmap]
rs2158727	0.83[CHD][hapmap]
rs2190209	0.89[ASN][1000 genomes]
rs2286185	0.83[CHD][hapmap]
rs2286186	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2286188	0.98[ASN][1000 genomes]
rs2301939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6945304	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7780675	0.82[CHD][hapmap]
rs7793364	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7793649	0.83[CHD][hapmap]
rs7794387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7800072	0.83[CHD][hapmap]
rs9642197	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84655000-84673600	Weak transcription	Fetal Brain Male	brain
2	chr7:84656200-84694800	Weak transcription	Fetal Stomach	stomach
3	chr7:84660600-84671200	Weak transcription	NHDF-Ad	bronchial
4	chr7:84664600-84680200	Weak transcription	Fetal Lung	lung
5	chr7:84666200-84671000	Weak transcription	Fetal Kidney	kidney
6	chr7:84667600-84668200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:84667600-84669000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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