Variant report

Variant	rs10255386
Chromosome Location	chr7:84627985-84627986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10227671	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs10228351	0.86[AFR][1000 genomes]
rs10228811	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs10254683	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs10266000	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274097	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs10278043	0.84[AFR][1000 genomes]
rs10278064	0.86[AFR][1000 genomes]
rs10480908	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs16887803	1.00[MEX][hapmap]
rs17159500	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159620	1.00[MEX][hapmap]
rs28517442	0.86[AFR][1000 genomes]
rs28698765	0.86[AFR][1000 genomes]
rs59006441	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713920	0.86[AFR][1000 genomes]
rs7793364	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84625800-84628600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:84625800-84630200	Weak transcription	Fetal Brain Male	brain
3	chr7:84626200-84628200	Weak transcription	Fetal Lung	lung
4	chr7:84626400-84639800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:84627000-84628400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:84627000-84632200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:84627200-84628200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:84627200-84632800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:84627200-84633800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:84627200-84633800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:84627200-84636800	Weak transcription	Fetal Stomach	stomach
12	chr7:84627400-84631600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:84627600-84628000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:84627600-84628200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:84627800-84633400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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