Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10228351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228375	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228811	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254683	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255386	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs10260704	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270864	0.81[AFR][1000 genomes]
rs10274097	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10480908	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159428	1.00[AMR][1000 genomes]
rs17159429	1.00[AMR][1000 genomes]
rs17159437	1.00[AMR][1000 genomes]
rs17159451	1.00[AMR][1000 genomes]
rs17159500	0.92[YRI][hapmap]
rs2178235	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470299	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28490165	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28517442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711627	1.00[AMR][1000 genomes]
rs73711631	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7805244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84634200-84654000	Weak transcription	Fetal Kidney	kidney
2	chr7:84643000-84654000	Weak transcription	HUVEC	blood vessel
3	chr7:84643400-84647000	Weak transcription	Fetal Intestine Small	intestine
4	chr7:84644600-84647400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:84644600-84662600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:84644800-84647800	Weak transcription	Fetal Lung	lung
7	chr7:84645200-84646000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:84645200-84646000	Enhancers	Fetal Heart	heart
9	chr7:84645200-84648000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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