Variant report
| Variant | rs28490165 |
|---|---|
| Chromosome Location | chr7:84606302-84606303 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:84605392..84607669-chr7:84610508..84612046,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10227671 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10228351 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10228375 | 1.00[AMR][1000 genomes] |
| rs10228811 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10254683 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10260704 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10266000 | 0.86[AFR][1000 genomes] |
| rs10270864 | 0.86[AFR][1000 genomes] |
| rs10274097 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10278043 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10278064 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10480908 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17159428 | 1.00[AMR][1000 genomes] |
| rs17159429 | 1.00[AMR][1000 genomes] |
| rs17159437 | 1.00[AMR][1000 genomes] |
| rs17159451 | 1.00[AMR][1000 genomes] |
| rs17159500 | 0.86[AFR][1000 genomes] |
| rs2178235 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28470299 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28517442 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28698765 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59006441 | 0.86[AFR][1000 genomes] |
| rs73711627 | 1.00[AMR][1000 genomes] |
| rs73711631 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73713920 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7805244 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949446 | chr7:84003501-84763823 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2422324 | chr7:84530290-84944913 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:84605400-84607800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr7:84605600-84614600 | Weak transcription | NHDF-Ad | bronchial |
