Variant report

Variant	rs10274097
Chromosome Location	chr7:84629993-84629994
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84623761..84625708-chr7:84627565..84630528,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10227671	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228375	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228811	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254683	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255386	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs10260704	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270864	0.81[AFR][1000 genomes]
rs10278043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10480908	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159428	1.00[AMR][1000 genomes]
rs17159429	1.00[AMR][1000 genomes]
rs17159437	1.00[AMR][1000 genomes]
rs17159451	1.00[AMR][1000 genomes]
rs17159500	0.92[YRI][hapmap]
rs2178235	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470299	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28490165	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28517442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711627	1.00[AMR][1000 genomes]
rs73711631	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7805244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84625800-84630200	Weak transcription	Fetal Brain Male	brain
2	chr7:84626400-84639800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:84627000-84632200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:84627200-84632800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:84627200-84633800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:84627200-84633800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:84627200-84636800	Weak transcription	Fetal Stomach	stomach
8	chr7:84627400-84631600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:84627800-84633400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:84628000-84632000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:84628200-84630400	Strong transcription	Fetal Lung	lung
12	chr7:84628200-84630800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:84628200-84631200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:84628200-84631600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:84628800-84631400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:84629000-84630200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:84629200-84631800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:84629200-84643000	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:84629600-84631600	Enhancers	Brain Germinal Matrix	brain
20	chr7:84629600-84632200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr7:84629800-84630800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr7:84629800-84631400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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