Variant report

Variant	rs10278043
Chromosome Location	chr7:84630783-84630784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10227671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228351	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228375	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254683	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255386	0.84[AFR][1000 genomes]
rs10260704	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274097	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278064	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10480908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159428	1.00[AMR][1000 genomes]
rs17159429	1.00[AMR][1000 genomes]
rs17159437	1.00[AMR][1000 genomes]
rs17159451	1.00[AMR][1000 genomes]
rs2178235	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470299	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28490165	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28517442	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711627	1.00[AMR][1000 genomes]
rs73711631	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713920	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7805244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84626400-84639800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:84627000-84632200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:84627200-84632800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:84627200-84633800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:84627200-84633800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:84627200-84636800	Weak transcription	Fetal Stomach	stomach
7	chr7:84627400-84631600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:84627800-84633400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:84628000-84632000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:84628200-84630800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:84628200-84631200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:84628200-84631600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:84628800-84631400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:84629200-84631800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:84629200-84643000	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:84629600-84631600	Enhancers	Brain Germinal Matrix	brain
17	chr7:84629600-84632200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:84629800-84630800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:84629800-84631400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:84630400-84633400	Weak transcription	Fetal Lung	lung
21	chr7:84630600-84632600	Weak transcription	Aorta	Aorta

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