Variant report

Variant	rs28698765
Chromosome Location	chr7:84655554-84655555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10227671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228375	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255386	0.86[AFR][1000 genomes]
rs10260704	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270864	0.81[AFR][1000 genomes]
rs10274097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10480908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159428	1.00[AMR][1000 genomes]
rs17159429	1.00[AMR][1000 genomes]
rs17159437	1.00[AMR][1000 genomes]
rs17159451	1.00[AMR][1000 genomes]
rs2178235	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470299	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28490165	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28517442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711627	1.00[AMR][1000 genomes]
rs73711631	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7805244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84644600-84662600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:84654000-84655600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:84654000-84655600	Enhancers	HUVEC	blood vessel
4	chr7:84654400-84655600	Enhancers	GM12878-XiMat	blood
5	chr7:84654600-84655600	Enhancers	HMEC	breast
6	chr7:84654600-84655800	Enhancers	NH-A	brain
7	chr7:84655000-84655600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:84655000-84655600	Enhancers	Hela-S3	cervix
9	chr7:84655000-84661000	Weak transcription	Aorta	Aorta
10	chr7:84655000-84673600	Weak transcription	Fetal Brain Male	brain
11	chr7:84655200-84655600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:84655400-84655600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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