Variant report

Variant	rs17159428
Chromosome Location	chr7:84518877-84518878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10227671	1.00[AMR][1000 genomes]
rs10228351	1.00[AMR][1000 genomes]
rs10228375	1.00[AMR][1000 genomes]
rs10228811	1.00[AMR][1000 genomes]
rs10254683	1.00[AMR][1000 genomes]
rs10260704	1.00[AMR][1000 genomes]
rs10274097	1.00[AMR][1000 genomes]
rs10278043	1.00[AMR][1000 genomes]
rs10278064	1.00[AMR][1000 genomes]
rs10480908	1.00[AMR][1000 genomes]
rs1594382	0.81[AFR][1000 genomes]
rs17159429	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159437	1.00[AMR][1000 genomes]
rs17159451	1.00[AMR][1000 genomes]
rs2178235	1.00[AMR][1000 genomes]
rs28470299	1.00[AMR][1000 genomes]
rs28490165	1.00[AMR][1000 genomes]
rs28517442	1.00[AMR][1000 genomes]
rs28698765	1.00[AMR][1000 genomes]
rs73711236	0.81[AFR][1000 genomes]
rs73711238	0.81[AFR][1000 genomes]
rs73711252	0.81[AFR][1000 genomes]
rs73711253	0.81[AFR][1000 genomes]
rs73711627	1.00[AMR][1000 genomes]
rs73711631	1.00[AMR][1000 genomes]
rs73712865	0.81[AFR][1000 genomes]
rs73712875	0.81[AFR][1000 genomes]
rs73713534	0.81[AFR][1000 genomes]
rs73713535	0.81[AFR][1000 genomes]
rs73713536	0.86[AFR][1000 genomes]
rs73713543	0.86[AFR][1000 genomes]
rs73713544	0.86[AFR][1000 genomes]
rs73713920	1.00[AMR][1000 genomes]
rs7456968	0.81[AFR][1000 genomes]
rs7805244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv981811	chr7:84518354-84523215	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84518400-84519600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links