Variant report

Variant	rs73711238
Chromosome Location	chr7:84456584-84456585
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1594382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159428	0.81[AFR][1000 genomes]
rs57712948	0.81[AFR][1000 genomes]
rs60563867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73390755	1.00[AMR][1000 genomes]
rs73711236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712840	1.00[AMR][1000 genomes]
rs73712855	0.81[AFR][1000 genomes]
rs73712857	0.81[AFR][1000 genomes]
rs73712865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713543	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713544	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7456968	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84456400-84456600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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