Variant report

Variant	rs73712857
Chromosome Location	chr7:84409868-84409869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1594382	0.81[AFR][1000 genomes]
rs4128625	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4620210	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55845074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56084530	1.00[AMR][1000 genomes]
rs57104792	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57712948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58637295	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59938380	1.00[AMR][1000 genomes]
rs59957921	1.00[AMR][1000 genomes]
rs60638992	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60660018	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710997	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711236	0.81[AFR][1000 genomes]
rs73711238	0.81[AFR][1000 genomes]
rs73711252	0.81[AFR][1000 genomes]
rs73711253	0.81[AFR][1000 genomes]
rs73712811	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712812	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712813	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712815	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712830	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712840	0.85[AFR][1000 genomes]
rs73712855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712865	0.81[AFR][1000 genomes]
rs73712875	0.81[AFR][1000 genomes]
rs73713534	0.81[AFR][1000 genomes]
rs73713535	0.81[AFR][1000 genomes]
rs7456968	0.81[AFR][1000 genomes]
rs7803277	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv888641	chr7:84168615-84453100	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv888643	chr7:84196258-84453100	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2762684	chr7:84218035-84444871	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84390400-84413800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:84409400-84410000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:84409400-84410600	Enhancers	K562	blood
4	chr7:84409600-84410000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:84409600-84410000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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