Variant report

Variant	rs73712830
Chromosome Location	chr7:84346383-84346384
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84344404..84346652-chr7:84371476..84374217,2	K562	blood:
2	chr7:84344259..84346664-chr7:84348601..84350704,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4128625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4620210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55845074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56084530	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57104792	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57712948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58637295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59938380	1.00[AMR][1000 genomes]
rs59957921	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60638992	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60660018	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712811	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712812	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712815	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712840	0.80[AFR][1000 genomes]
rs73712855	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712857	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7803277	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1031149	chr7:84144990-84404356	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv888641	chr7:84168615-84453100	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1031328	chr7:84182356-84377593	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1016221	chr7:84183142-84377593	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv888643	chr7:84196258-84453100	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019814	chr7:84208284-84369045	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2762684	chr7:84218035-84444871	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv831047	chr7:84231938-84408081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv888644	chr7:84253690-84386060	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84342600-84348800	Weak transcription	Hela-S3	cervix
2	chr7:84344600-84349600	Weak transcription	Fetal Heart	heart

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