Variant report
| Variant | rs73713543 |
|---|---|
| Chromosome Location | chr7:84493404-84493405 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:84491524..84493832-chr7:84496433..84498597,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1594382 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17159428 | 0.86[AFR][1000 genomes] |
| rs17159429 | 0.81[AFR][1000 genomes] |
| rs60563867 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73390755 | 1.00[AMR][1000 genomes] |
| rs73711236 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73711238 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73711252 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73711253 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73712840 | 1.00[AMR][1000 genomes] |
| rs73712865 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73712875 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73713534 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73713535 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73713536 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73713544 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7456968 | 0.95[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529344 | chr7:83714286-84592857 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv949446 | chr7:84003501-84763823 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 3 | esv34238 | chr7:84279023-84591966 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv831050 | chr7:84355996-84527261 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:84491400-84504400 | Weak transcription | K562 | blood |
