Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56707702..56709298-chr7:84633322..84635747,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10227671	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228375	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228811	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254683	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255386	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs10260704	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270864	0.81[AFR][1000 genomes]
rs10274097	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159428	1.00[AMR][1000 genomes]
rs17159429	1.00[AMR][1000 genomes]
rs17159437	1.00[AMR][1000 genomes]
rs17159451	1.00[AMR][1000 genomes]
rs17159500	0.91[YRI][hapmap]
rs2178235	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470299	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28490165	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28517442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711627	1.00[AMR][1000 genomes]
rs73711631	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7805244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84626400-84639800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:84627200-84633800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:84627200-84633800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:84627200-84636800	Weak transcription	Fetal Stomach	stomach
5	chr7:84629200-84643000	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:84632400-84633800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:84632600-84644400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:84633200-84634400	Enhancers	Colon Smooth Muscle	Colon
9	chr7:84633400-84633800	Enhancers	Rectal Smooth Muscle	rectum
10	chr7:84633400-84634000	Enhancers	Fetal Lung	lung
11	chr7:84633400-84634200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:84633600-84634000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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