Variant report

Variant	rs59006441
Chromosome Location	chr7:84614669-84614670
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10255386	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260704	0.84[AFR][1000 genomes]
rs10266000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2178235	0.84[AFR][1000 genomes]
rs28470299	0.86[AFR][1000 genomes]
rs28490165	0.86[AFR][1000 genomes]
rs73711631	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84613800-84616400	Weak transcription	Right Atrium	heart
2	chr7:84614400-84614800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:84614400-84614800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:84614600-84615000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:84614600-84615000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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