Variant report

Variant	rs17159573
Chromosome Location	chr7:84659708-84659709
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84659480..84660360-chr7:85183314..85184162,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12112932	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs1534573	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16887803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17159549	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17159556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2190209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2286186	0.98[ASN][1000 genomes]
rs2286188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2293575	1.00[EUR][1000 genomes]
rs2301939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2372506	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57189679	1.00[EUR][1000 genomes]
rs58363308	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6945304	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7793364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7794387	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7801980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811798	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9640953	1.00[EUR][1000 genomes]
rs9642194	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9642197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs987014	0.86[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84644600-84662600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:84655000-84661000	Weak transcription	Aorta	Aorta
3	chr7:84655000-84673600	Weak transcription	Fetal Brain Male	brain
4	chr7:84655600-84666000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:84655600-84667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:84655800-84660400	Weak transcription	NH-A	brain
7	chr7:84656200-84694800	Weak transcription	Fetal Stomach	stomach
8	chr7:84659000-84660400	Weak transcription	Fetal Lung	lung

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