Variant report

Variant	rs1534566
Chromosome Location	chr7:84554900-84554901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84554524..84556792-chr7:84558035..84560018,2	K562	blood:
2	chr7:84553263..84557308-chr7:84557996..84561050,4	K562	blood:

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1016027	0.86[EUR][1000 genomes]
rs10225455	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10231441	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10237102	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10244898	0.85[EUR][1000 genomes]
rs10247311	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10256889	0.84[EUR][1000 genomes]
rs10261725	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10267189	0.84[EUR][1000 genomes]
rs10268216	0.84[EUR][1000 genomes]
rs10271823	0.84[EUR][1000 genomes]
rs10277834	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10281252	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10282482	0.87[EUR][1000 genomes]
rs10486845	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11760335	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11766179	0.88[EUR][1000 genomes]
rs11980498	0.87[EUR][1000 genomes]
rs11980984	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11982720	0.87[AMR][1000 genomes]
rs12112643	0.86[AMR][1000 genomes]
rs12113270	0.86[AMR][1000 genomes]
rs12154971	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12155292	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12707691	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12707692	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12707693	0.85[EUR][1000 genomes]
rs12707695	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12707696	0.87[EUR][1000 genomes]
rs13230423	0.85[EUR][1000 genomes]
rs13231019	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13231340	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13232515	0.85[EUR][1000 genomes]
rs13232613	0.85[EUR][1000 genomes]
rs13232789	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13233871	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13234489	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13234914	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13240751	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13244179	0.85[EUR][1000 genomes]
rs13307855	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1468396	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1528621	0.85[EUR][1000 genomes]
rs1534565	0.95[EUR][1000 genomes]
rs1534572	0.88[EUR][1000 genomes]
rs17159470	0.84[EUR][1000 genomes]
rs17558957	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17559084	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17639510	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17639600	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1919282	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2040957	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2103312	0.85[EUR][1000 genomes]
rs2141415	0.85[EUR][1000 genomes]
rs2158727	0.86[AMR][1000 genomes]
rs2178236	0.85[EUR][1000 genomes]
rs2190211	0.87[AMR][1000 genomes]
rs2190213	0.82[AMR][1000 genomes]
rs2214820	0.84[AMR][1000 genomes]
rs2240393	0.87[EUR][1000 genomes]
rs2286185	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2286189	0.86[AMR][1000 genomes]
rs2372503	0.85[EUR][1000 genomes]
rs2372510	0.87[AMR][1000 genomes]
rs2372511	0.87[AMR][1000 genomes]
rs28819164	0.85[EUR][1000 genomes]
rs34004921	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34134012	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34462522	0.85[EUR][1000 genomes]
rs34584772	0.85[EUR][1000 genomes]
rs34931062	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34996468	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35003658	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35449238	0.85[EUR][1000 genomes]
rs35600623	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35826544	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35853835	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4141132	0.87[EUR][1000 genomes]
rs4560742	0.85[EUR][1000 genomes]
rs56039102	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57531424	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59006756	0.87[AMR][1000 genomes]
rs62472060	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62472062	0.88[EUR][1000 genomes]
rs62472078	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62472081	0.84[EUR][1000 genomes]
rs62472087	0.85[EUR][1000 genomes]
rs62472088	0.85[EUR][1000 genomes]
rs62472110	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6468010	0.86[AMR][1000 genomes]
rs6959903	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6962714	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6965396	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs713153	0.85[EUR][1000 genomes]
rs713154	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71560707	0.85[EUR][1000 genomes]
rs7776699	0.85[EUR][1000 genomes]
rs7777682	0.85[EUR][1000 genomes]
rs7780675	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7788896	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7790637	0.85[EUR][1000 genomes]
rs7790809	0.85[EUR][1000 genomes]
rs7793649	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7794144	0.85[EUR][1000 genomes]
rs7794619	0.85[EUR][1000 genomes]
rs7794920	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7798487	0.84[EUR][1000 genomes]
rs7800072	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7801626	0.85[EUR][1000 genomes]
rs7803548	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7807283	0.85[EUR][1000 genomes]
rs7809383	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9642196	0.85[EUR][1000 genomes]
rs9942642	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1032638	chr7:84550206-84603392	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84542800-84557000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:84554000-84569200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:84554200-84556800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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