Variant report

Variant	rs58333240
Chromosome Location	chr7:84411964-84411965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84411277..84412944-chr7:84416634..84418827,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10155838	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10226259	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10226299	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10231229	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10234675	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10235779	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10236624	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10240135	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10244742	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10249541	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10253824	0.94[ASN][1000 genomes]
rs10253977	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10258050	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10260013	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10263930	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10264994	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10266193	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10268436	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10268834	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10269265	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10270396	0.96[ASN][1000 genomes]
rs10270546	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10270873	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10271786	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10274807	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10480534	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12112932	0.82[AFR][1000 genomes]
rs13438201	0.94[ASN][1000 genomes]
rs13438429	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1583140	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1583141	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1594376	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1594377	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28408003	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28439673	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28448564	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28674967	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28735889	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28804974	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28852818	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4128624	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4358754	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4439049	0.93[ASN][1000 genomes]
rs4443588	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4604378	0.90[ASN][1000 genomes]
rs4620233	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4728561	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4728562	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4732586	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4732587	0.82[AMR][1000 genomes]
rs57219677	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57297444	0.86[ASN][1000 genomes]
rs57745821	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58175686	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58474078	0.93[ASN][1000 genomes]
rs59138424	0.82[AMR][1000 genomes]
rs60041128	0.85[AFR][1000 genomes]
rs60911534	0.85[AFR][1000 genomes]
rs61320605	0.97[AFR][1000 genomes]
rs6943231	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6947577	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6947596	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6957762	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6961296	0.93[AFR][1000 genomes]
rs6968373	0.93[AFR][1000 genomes]
rs6975316	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7781015	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7788552	0.92[ASN][1000 genomes]
rs7793020	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7796908	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7797337	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7797505	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7798174	0.92[AFR][1000 genomes]
rs7801427	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7804530	1.00[AFR][1000 genomes]
rs7809245	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7810914	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs891484	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9640953	0.82[AFR][1000 genomes]
rs9642190	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv888641	chr7:84168615-84453100	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv888643	chr7:84196258-84453100	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2762684	chr7:84218035-84444871	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84390400-84413800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:84410600-84412600	Weak transcription	K562	blood
3	chr7:84411800-84412200	Enhancers	Hela-S3	cervix
4	chr7:84411800-84412600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links