Variant report

Variant	rs10157068
Chromosome Location	chr1:114574755-114574756
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114569420..114571718-chr1:114573610..114578040,4	MCF-7	breast:
2	chr1:114572795..114577655-chr1:114580622..114587867,10	MCF-7	breast:
3	chr1:114574403..114579108-chr1:114596233..114599527,4	MCF-7	breast:
4	chr1:114573784..114577041-chr1:114577163..114579413,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYT6-2	chr1:114574656-114574814	NONHSAT005351

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10157483	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17032136	1.00[EUR][1000 genomes]
rs17032139	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17032141	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58396707	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61197707	1.00[EUR][1000 genomes]
rs7520510	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv2754686	chr1:114531958-114602958	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114567000-114575200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:114567200-114575000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:114569800-114575000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:114569800-114575000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:114569800-114575000	Weak transcription	Psoas Muscle	Psoas
6	chr1:114569800-114575400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:114570200-114575000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:114570400-114574800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:114571000-114575200	Weak transcription	HSMMtube	muscle
10	chr1:114572800-114575000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:114573400-114575200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr1:114574000-114575200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:114574200-114575000	Active TSS	H1 Cell Line	embryonic stem cell
14	chr1:114574400-114575000	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr1:114574400-114575000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:114574400-114575600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:114574600-114575000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr1:114574600-114575000	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr1:114574600-114575000	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr1:114574600-114575000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:114574600-114575000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr1:114574600-114575400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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