Variant report

Variant	rs17032141
Chromosome Location	chr1:114576095-114576096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:114575601..114576530-chr1:114888663..114889718,3	MCF-7	breast:
2	chr1:114519655..114520167-chr1:114575158..114576111,2	MCF-7	breast:
3	chr1:114575592..114576473-chr1:114761828..114762361,2	MCF-7	breast:
4	chr1:114575688..114576657-chr1:114757792..114758818,3	MCF-7	breast:
5	chr1:114575984..114576551-chr16:67189207..67189812,2	MCF-7	breast:
6	chr1:114534979..114536505-chr1:114575410..114577560,2	MCF-7	breast:
7	chr1:114569420..114571718-chr1:114573610..114578040,4	MCF-7	breast:
8	chr1:114521078..114521660-chr1:114575676..114576486,2	MCF-7	breast:
9	chr1:114575048..114578122-chr1:114756495..114758654,3	MCF-7	breast:
10	chr1:114572795..114577655-chr1:114580622..114587867,10	MCF-7	breast:
11	chr1:114575953..114576576-chr1:114888894..114889752,2	MCF-7	breast:
12	chr1:114575470..114578189-chr1:114589215..114591996,2	MCF-7	breast:
13	chr1:114575353..114578271-chr1:114615891..114617470,2	MCF-7	breast:
14	chr1:114575962..114577574-chr1:114577976..114579706,2	MCF-7	breast:
15	chr1:114521141..114522012-chr1:114575822..114576619,5	MCF-7	breast:
16	chr1:114575585..114577385-chr9:88968355..88970269,2	MCF-7	breast:
17	chr1:114574805..114577310-chr16:67192627..67195082,2	MCF-7	breast:
18	chr1:114575631..114576521-chr1:114825066..114826040,4	MCF-7	breast:
19	chr1:114576041..114576656-chr1:114804475..114805150,2	MCF-7	breast:
20	chr1:114520498..114523229-chr1:114575695..114578071,3	MCF-7	breast:
21	chr1:114574403..114579108-chr1:114596233..114599527,4	MCF-7	breast:
22	chr1:114573784..114577041-chr1:114577163..114579413,3	MCF-7	breast:
23	chr1:114575753..114576297-chr2:88751081..88752068,2	MCF-7	breast:
24	chr1:114575647..114576555-chr1:114825189..114826082,7	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OLFML3-2	chr1:114574961-114577268	NONHSAT005352

No data

Variant related genes	Relation type
ENSG00000232895	Chromatin interaction
ENSG00000083223	Chromatin interaction
ENSG00000102871	Chromatin interaction
ENSG00000214336	Chromatin interaction
ENSG00000135722	Chromatin interaction
ENSG00000116774	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10157068	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10157483	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17032136	1.00[EUR][1000 genomes]
rs17032139	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58396707	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61197707	1.00[EUR][1000 genomes]
rs7520510	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv2754686	chr1:114531958-114602958	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114574800-114577400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:114575000-114576200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:114575000-114576200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:114575000-114576200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:114575000-114576200	Enhancers	NHDF-Ad	bronchial
6	chr1:114575000-114576200	Enhancers	Osteobl	bone
7	chr1:114575000-114576400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:114575000-114576400	Enhancers	HSMM	muscle
9	chr1:114575000-114576600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:114575000-114576800	Enhancers	Fetal Intestine Small	intestine
11	chr1:114575000-114577000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:114575000-114577200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:114575000-114577200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:114575000-114577400	Enhancers	NHEK	skin
15	chr1:114575000-114577600	Enhancers	HMEC	breast
16	chr1:114575000-114577800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr1:114575000-114578000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr1:114575000-114578400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr1:114575000-114578400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr1:114575200-114576200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:114575200-114576600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:114575200-114577200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:114575200-114578400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr1:114575400-114576200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:114575400-114576600	Enhancers	Fetal Intestine Large	intestine
26	chr1:114575400-114576600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr1:114575400-114577400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr1:114575400-114577600	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr1:114575800-114576200	Enhancers	Brain Anterior Caudate	brain
30	chr1:114575800-114576200	Enhancers	NH-A	brain
31	chr1:114575800-114577200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:114575800-114577400	Active TSS	H9 Cell Line	embryonic stem cell
33	chr1:114575800-114577800	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr1:114576000-114576200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr1:114576000-114576400	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr1:114576000-114576400	Enhancers	Fetal Muscle Leg	muscle
37	chr1:114576000-114576400	Enhancers	A549	lung
38	chr1:114576000-114577000	Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr1:114576000-114577200	Active TSS	H1 Cell Line	embryonic stem cell
40	chr1:114576000-114577600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr1:114576000-114577800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:114576000-114579400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:114576000-114580200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr1:114576000-114582800	Weak transcription	HSMMtube	muscle
45	chr1:114576000-114583400	Weak transcription	Lung	lung

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