Variant report

Variant	rs1015811
Chromosome Location	chr6:28448086-28448087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28364005..28367844-chr6:28444304..28449588,6	K562	blood:
2	chr6:28441214..28445163-chr6:28446286..28449658,4	K562	blood:
3	chr6:28447279..28449028-chr6:28691050..28693520,2	K562	blood:
4	chr6:27100692..27102905-chr6:28448028..28449823,2	K562	blood:
5	chr6:27100850..27102905-chr6:28448028..28449687,2	K562	blood:
6	chr6:28440523..28445742-chr6:28446027..28449241,8	K562	blood:
7	chr6:28446745..28449657-chr6:28455146..28458037,3	MCF-7	breast:
8	chr6:28429774..28433738-chr6:28446930..28450436,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1016069	0.90[EUR][1000 genomes]
rs2191035	0.82[EUR][1000 genomes]
rs2531820	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2859351	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28447800-28448800	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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