Variant report

Variant	rs2859351
Chromosome Location	chr6:28456195-28456196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28446745..28449657-chr6:28455146..28458037,3	MCF-7	breast:
2	chr6:27858756..27861228-chr6:28455818..28458096,2	K562	blood:
3	chr6:28372326..28375748-chr6:28455628..28458983,4	K562	blood:
4	chr6:28187359..28189911-chr6:28455377..28457870,2	K562	blood:
5	chr6:28451721..28454293-chr6:28455250..28457902,2	MCF-7	breast:
6	chr6:28455757..28458631-chr6:28484303..28486741,3	K562	blood:
7	chr6:28364266..28370257-chr6:28453674..28463075,14	K562	blood:
8	chr6:28455752..28457337-chr6:28581196..28584117,2	K562	blood:
9	chr6:28192543..28195348-chr6:28455724..28457783,2	K562	blood:
10	chr6:28455084..28458229-chr6:28499553..28502958,3	K562	blood:
11	chr6:28364227..28369783-chr6:28455559..28460332,7	K562	blood:
12	chr6:27858485..27861228-chr6:28455818..28458807,3	K562	blood:
13	chr6:28446299..28448037-chr6:28455509..28457029,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000158691	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000232040	Chromatin interaction
ENSG00000197153	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1015811	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1016069	0.84[EUR][1000 genomes]
rs2531820	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28451800-28456800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:28453600-28456600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:28455200-28457600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:28456000-28456400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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