Variant report

Variant	rs10159147
Chromosome Location	chr1:174329323-174329324
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174328732..174330689-chr1:174332303..174334086,2	K562	blood:
2	chr1:174320271..174322217-chr1:174328823..174331200,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10158071	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs10465509	1.00[AMR][1000 genomes]
rs13375254	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs13376562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28605445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2860910	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6671256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6704395	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548945	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9970722	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872552	chr1:174061844-174469748	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv1799250	chr1:174119038-174484277	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv1800060	chr1:174132703-174501836	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv465672	chr1:174133251-174469905	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv548194	chr1:174133251-174469905	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv470746	chr1:174150850-174469905	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1001803	chr1:174176164-174367747	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1008993	chr1:174180019-174331358	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
9	nsv872553	chr1:174195629-174373379	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1010069	chr1:174215293-174539512	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv1795045	chr1:174273004-174346276	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174298000-174361800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr1:174310600-174362400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:174315600-174366400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:174317400-174342400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr1:174318800-174369800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:174319200-174362600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:174322400-174363000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:174322600-174334000	Weak transcription	Gastric	stomach
9	chr1:174325400-174331200	Weak transcription	GM12878-XiMat	blood
10	chr1:174325800-174382800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:174326200-174334000	Weak transcription	Pancreas	Pancrea
12	chr1:174326400-174346800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:174327400-174334000	Weak transcription	Primary B cells from cord blood	blood
14	chr1:174327400-174362000	Weak transcription	Primary T cells from cord blood	blood
15	chr1:174327600-174362200	Weak transcription	Aorta	Aorta
16	chr1:174328600-174331600	Weak transcription	Fetal Lung	lung
17	chr1:174328600-174343800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:174328600-174345600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr1:174328800-174329600	Enhancers	Fetal Heart	heart
20	chr1:174328800-174347200	Weak transcription	Fetal Intestine Small	intestine
21	chr1:174328800-174366400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:174329200-174333800	Weak transcription	Brain Hippocampus Middle	brain

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