Variant report

Variant	rs10159368
Chromosome Location	chr1:221593165-221593166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10158385	0.84[AMR][1000 genomes]
rs72730821	0.80[AFR][1000 genomes]
rs9308394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9728075	0.88[AFR][1000 genomes]
rs9730332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221586600-221593800	Enhancers	Hela-S3	cervix
2	chr1:221591600-221593200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:221591600-221593200	Enhancers	NHLF	lung
4	chr1:221591600-221593400	Enhancers	Osteobl	bone
5	chr1:221591600-221593600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:221591600-221593600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:221591600-221593600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:221591600-221593800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:221591600-221593800	Enhancers	NHDF-Ad	bronchial
10	chr1:221591600-221593800	Enhancers	NHEK	skin
11	chr1:221591600-221594000	Enhancers	HMEC	breast
12	chr1:221591800-221593600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:221591800-221593600	Enhancers	NH-A	brain
14	chr1:221591800-221593800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:221591800-221594000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:221592000-221593200	Enhancers	Placenta	Placenta
17	chr1:221592000-221593400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:221592000-221593600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:221592400-221593400	Enhancers	HUVEC	blood vessel
20	chr1:221592600-221593200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr1:221592600-221593600	Enhancers	Colon Smooth Muscle	Colon
22	chr1:221592600-221593600	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:221592800-221593200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:221592800-221593200	Enhancers	Left Ventricle	heart
25	chr1:221592800-221593400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr1:221592800-221593400	Enhancers	Stomach Mucosa	stomach
27	chr1:221592800-221593600	Enhancers	Adipose Nuclei	Adipose

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