Variant report

Variant	rs72730821
Chromosome Location	chr1:221587678-221587679
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10159368	0.80[AFR][1000 genomes]
rs10465658	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10495176	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12562069	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1380251	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17009966	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56245908	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72730814	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72730815	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72730817	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72730823	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72746084	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72746086	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72746087	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9726422	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221582600-221588000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:221582600-221589000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:221585600-221587800	Weak transcription	HUVEC	blood vessel
4	chr1:221586000-221587800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:221586600-221593800	Enhancers	Hela-S3	cervix
6	chr1:221587600-221588000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links