Variant report

Variant	rs10465658
Chromosome Location	chr1:221606691-221606692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10495176	0.90[EUR][1000 genomes]
rs12134883	0.85[JPT][hapmap]
rs12562069	0.90[EUR][1000 genomes]
rs1380251	0.90[EUR][1000 genomes]
rs17009966	0.90[EUR][1000 genomes]
rs56245908	0.90[EUR][1000 genomes]
rs72730814	0.90[EUR][1000 genomes]
rs72730815	0.90[EUR][1000 genomes]
rs72730817	0.90[EUR][1000 genomes]
rs72730821	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72730823	0.90[EUR][1000 genomes]
rs72746084	0.90[EUR][1000 genomes]
rs72746086	0.86[EUR][1000 genomes]
rs72746087	0.90[EUR][1000 genomes]
rs9308394	0.85[AFR][1000 genomes]
rs9726422	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9730332	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221602400-221606800	Enhancers	Hela-S3	cervix
2	chr1:221602800-221608600	Weak transcription	NHDF-Ad	bronchial
3	chr1:221603800-221609800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:221604800-221608600	Weak transcription	NHLF	lung
5	chr1:221604800-221612800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:221605000-221608400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:221605000-221608600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:221605000-221609000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:221605000-221609000	Weak transcription	Osteobl	bone
10	chr1:221605000-221611400	Weak transcription	A549	lung
11	chr1:221605200-221608600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:221605200-221608600	Weak transcription	HUVEC	blood vessel
13	chr1:221605200-221611400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:221605400-221611400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:221605400-221611400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:221605600-221609000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr1:221605800-221612400	Weak transcription	Fetal Heart	heart
18	chr1:221605800-221613600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:221606000-221608200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:221606200-221613400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:221606600-221608400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links