Variant report

Variant	rs10160194
Chromosome Location	chr10:89867111-89867112
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10749563	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1360952	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6586119	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7901779	0.87[EUR][1000 genomes]
rs7914010	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89861600-89868000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:89863200-89869000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:89863800-89869200	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:89864600-89875400	Weak transcription	Aorta	Aorta
5	chr10:89865000-89869000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:89865600-89868600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:89865800-89868600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:89865800-89868800	Enhancers	Primary hematopoietic stem cells	blood
9	chr10:89865800-89870200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:89866200-89867600	Weak transcription	Thymus	Thymus
11	chr10:89866400-89867400	Enhancers	GM12878-XiMat	blood
12	chr10:89866400-89867600	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:89866400-89867600	Weak transcription	Spleen	Spleen
14	chr10:89866400-89868400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:89866400-89868800	Enhancers	Fetal Thymus	thymus
16	chr10:89866600-89868600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:89866800-89867400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr10:89866800-89869000	Enhancers	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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