Variant report

Variant	rs6586119
Chromosome Location	chr10:89863723-89863724
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10160194	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10749563	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10788582	0.90[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1360952	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2184698	0.81[AMR][1000 genomes]
rs6586120	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7070956	0.81[AMR][1000 genomes]
rs7901779	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs945563	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6586119	FAM190B	cis	cerebellum	SCAN
rs6586119	STAMBPL1	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89856000-89864800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:89860800-89864200	Enhancers	GM12878-XiMat	blood
3	chr10:89861000-89863800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:89861600-89868000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:89861800-89865000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr10:89862600-89864200	Active TSS	Primary hematopoietic stem cells	blood
7	chr10:89863000-89864600	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr10:89863200-89869000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:89863400-89863800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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