Variant report

Variant	rs2184698
Chromosome Location	chr10:89852061-89852062
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89851904..89854023-chr10:89865175..89867253,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10749563	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6586119	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs7070956	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7901779	0.80[AMR][1000 genomes]
rs7914010	0.86[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3387445	chr10:89851072-89855170	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89836600-89852400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:89839400-89855000	Weak transcription	Lung	lung
3	chr10:89848800-89852800	Enhancers	HMEC	breast
4	chr10:89848800-89856200	Enhancers	Fetal Thymus	thymus
5	chr10:89849400-89852800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:89849400-89852800	Weak transcription	Pancreas	Pancrea
7	chr10:89849400-89853200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:89849400-89853400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:89849400-89854200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr10:89849400-89854600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:89849600-89852400	Weak transcription	Adipose Nuclei	Adipose
12	chr10:89849600-89852600	Weak transcription	Fetal Lung	lung
13	chr10:89849600-89853200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:89849600-89853200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr10:89849600-89853200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:89849600-89853400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:89849600-89853600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr10:89849800-89852200	Enhancers	Primary B cells from cord blood	blood
19	chr10:89849800-89852800	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:89850000-89852400	Weak transcription	Left Ventricle	heart
21	chr10:89850000-89852600	Weak transcription	Liver	Liver
22	chr10:89850000-89853000	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:89850000-89853200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:89850000-89853400	Enhancers	Primary T cells from cord blood	blood
25	chr10:89850200-89852400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:89850200-89853400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:89850200-89854200	Enhancers	Primary T cells fromperipheralblood	blood
28	chr10:89850400-89852800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:89850400-89853400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr10:89850400-89854600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:89850600-89852800	Weak transcription	Esophagus	oesophagus
32	chr10:89850600-89853000	Enhancers	NHEK	skin
33	chr10:89850800-89852400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:89851000-89853000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:89851200-89852200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr10:89851600-89852400	Flanking Active TSS	GM12878-XiMat	blood
37	chr10:89851800-89852200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:89851800-89852800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:89851800-89853400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr10:89851800-89853600	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr10:89851800-89857400	Enhancers	Dnd41	blood
42	chr10:89852000-89852400	Weak transcription	Thymus	Thymus
43	chr10:89852000-89854800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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