Variant report

Variant	rs10160373
Chromosome Location	chr11:8645510-8645511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8644589..8647498-chr11:8659025..8660844,2	MCF-7	breast:
2	chr11:8644859..8647194-chr11:8648029..8650090,2	K562	blood:
3	chr11:8641168..8642878-chr11:8644731..8647505,2	K562	blood:
4	chr11:8645312..8647194-chr11:8647433..8649529,2	K562	blood:

Variant related genes	Relation type
ENSG00000166436	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10743084	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10840102	0.84[AFR][1000 genomes]
rs11042019	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042030	0.84[AFR][1000 genomes]
rs11042033	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12286011	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12295729	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12787554	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13328833	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34655699	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35319120	0.86[AFR][1000 genomes]
rs3942866	0.91[AMR][1000 genomes]
rs57012665	0.84[ASN][1000 genomes]
rs7110529	0.85[AFR][1000 genomes]
rs7118611	0.85[AFR][1000 genomes]
rs7935453	0.95[ASN][1000 genomes]
rs7941510	0.84[AFR][1000 genomes]
rs7947230	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:8626200-8653000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:8626600-8648800	Weak transcription	Stomach Mucosa	stomach
5	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
6	chr11:8630600-8653000	Weak transcription	Osteobl	bone
7	chr11:8630800-8645600	Weak transcription	NH-A	brain
8	chr11:8630800-8645800	Weak transcription	NHDF-Ad	bronchial
9	chr11:8632800-8659000	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:8632800-8663800	Weak transcription	Fetal Kidney	kidney
11	chr11:8634000-8646800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:8634200-8647200	Strong transcription	Liver	Liver
13	chr11:8634600-8645600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:8634600-8661600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:8634600-8661800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:8634800-8657600	Weak transcription	Psoas Muscle	Psoas
17	chr11:8635400-8646800	Weak transcription	Fetal Brain Male	brain
18	chr11:8635400-8647000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:8635400-8661400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:8635600-8647000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:8636200-8646400	Weak transcription	Fetal Brain Female	brain
22	chr11:8636200-8646600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:8636200-8661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:8636600-8657000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr11:8636800-8647000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:8636800-8647200	Strong transcription	Stomach Smooth Muscle	stomach
27	chr11:8636800-8647400	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:8637000-8647200	Strong transcription	Fetal Intestine Small	intestine
29	chr11:8637000-8661600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
31	chr11:8637200-8646800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:8637200-8646800	Strong transcription	Placenta	Placenta
33	chr11:8637200-8646800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr11:8637200-8647000	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr11:8637200-8647000	Strong transcription	Lung	lung
36	chr11:8637200-8647200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:8637200-8647200	Strong transcription	Aorta	Aorta
38	chr11:8637200-8647200	Strong transcription	Pancreas	Pancrea
39	chr11:8637200-8647200	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:8637200-8647200	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:8637200-8647400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:8637200-8647600	Strong transcription	Primary T cells from cord blood	blood
43	chr11:8637200-8647600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr11:8637200-8648200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr11:8637200-8648800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr11:8637400-8646800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:8637400-8646800	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr11:8637400-8647000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:8637400-8647000	Strong transcription	Spleen	Spleen
50	chr11:8637400-8647600	Strong transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links