Variant report

Variant	rs12295729
Chromosome Location	chr11:8659404-8659405
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8644589..8647498-chr11:8659025..8660844,2	MCF-7	breast:
2	chr11:8645853..8647429-chr11:8659220..8661284,2	K562	blood:
3	chr11:8653431..8656351-chr11:8659273..8662125,2	K562	blood:
4	chr11:8659357..8661041-chr11:8981138..8982951,2	K562	blood:
5	chr11:8659121..8661861-chr11:8664570..8666736,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10160373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10743084	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840102	0.87[AFR][1000 genomes]
rs10840104	0.82[AFR][1000 genomes]
rs11042019	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042030	0.87[AFR][1000 genomes]
rs11042033	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12286011	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12787554	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13328833	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34655699	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35319120	0.89[AFR][1000 genomes]
rs3942866	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57012665	0.87[ASN][1000 genomes]
rs7110529	0.88[AFR][1000 genomes]
rs7118611	0.85[AFR][1000 genomes]
rs7935453	0.99[ASN][1000 genomes]
rs7941510	0.87[AFR][1000 genomes]
rs7947230	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
4	chr11:8632800-8663800	Weak transcription	Fetal Kidney	kidney
5	chr11:8634600-8661600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:8634600-8661800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:8635400-8661400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:8636200-8661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:8637000-8661600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
11	chr11:8639600-8661000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:8639800-8659800	Weak transcription	K562	blood
13	chr11:8641400-8661600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:8641800-8666200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:8644800-8663400	Weak transcription	Fetal Lung	lung
16	chr11:8644800-8667000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:8646000-8661600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:8646200-8671000	Weak transcription	HUVEC	blood vessel
19	chr11:8646400-8666400	Weak transcription	HSMM	muscle
20	chr11:8647000-8661200	Weak transcription	Right Ventricle	heart
21	chr11:8647400-8659800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:8649600-8665400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:8650800-8676200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:8652200-8675000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:8653200-8659800	Weak transcription	NHDF-Ad	bronchial
26	chr11:8653400-8659600	Weak transcription	Osteobl	bone
27	chr11:8653400-8659800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:8653400-8659800	Weak transcription	NH-A	brain
29	chr11:8653400-8659800	Weak transcription	NHLF	lung
30	chr11:8653400-8663800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:8653400-8664000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:8653400-8667000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:8653600-8661600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr11:8654000-8673800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr11:8654200-8662000	Strong transcription	Duodenum Mucosa	Duodenum
36	chr11:8654200-8663200	Weak transcription	Fetal Brain Male	brain
37	chr11:8654200-8673800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:8654200-8675600	Strong transcription	Stomach Smooth Muscle	stomach
39	chr11:8654400-8672400	Strong transcription	Brain Anterior Caudate	brain
40	chr11:8655000-8662000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:8655000-8662600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:8655000-8664200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:8655000-8664200	Strong transcription	Fetal Stomach	stomach
44	chr11:8655000-8670200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:8655000-8676400	Strong transcription	Primary T cells from cord blood	blood
46	chr11:8655200-8659800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:8655200-8664200	Strong transcription	Brain Hippocampus Middle	brain
48	chr11:8655200-8664400	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:8655200-8664800	Strong transcription	Lung	lung
50	chr11:8655200-8665000	Strong transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links