Variant report

Variant	rs10160537
Chromosome Location	chr11:34829799-34829800
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11032883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12276426	1.00[AFR][1000 genomes]
rs12278003	1.00[AMR][1000 genomes]
rs12287607	1.00[AMR][1000 genomes]
rs12287782	0.93[AFR][1000 genomes]
rs12291078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291699	0.93[AFR][1000 genomes]
rs1342027	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1857065	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28882777	1.00[AMR][1000 genomes]
rs7937272	1.00[AMR][1000 genomes]
rs7948359	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1049551	chr11:34811180-34833640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34815000-34833600	Weak transcription	HepG2	liver
2	chr11:34828400-34831400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:34828600-34829800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:34828600-34831000	Weak transcription	Stomach Mucosa	stomach
5	chr11:34828800-34829800	Weak transcription	HUVEC	blood vessel
6	chr11:34829000-34832400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:34829400-34831000	ZNF genes & repeats	K562	blood
8	chr11:34829600-34832400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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