Variant report

Variant	rs12287782
Chromosome Location	chr11:34842594-34842595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10160537	0.93[AFR][1000 genomes]
rs11032883	0.93[AFR][1000 genomes]
rs12276426	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278003	0.86[AFR][1000 genomes]
rs12287607	0.81[AFR][1000 genomes]
rs12291078	0.90[AFR][1000 genomes]
rs12291565	1.00[AMR][1000 genomes]
rs12291699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1342027	0.82[AFR][1000 genomes]
rs1857065	0.95[AFR][1000 genomes]
rs7948359	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34832400-34846000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34839400-34844000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:34840600-34844400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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