Variant report

Variant	rs12291565
Chromosome Location	chr11:34844727-34844728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12276426	1.00[AMR][1000 genomes]
rs12278295	0.85[YRI][hapmap]
rs12287782	1.00[AMR][1000 genomes]
rs12291699	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34832400-34846000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34843600-34845600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:34843600-34845600	Enhancers	Liver	Liver
4	chr11:34843800-34845800	Enhancers	Adipose Nuclei	Adipose
5	chr11:34844000-34845800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:34844400-34846200	Enhancers	HepG2	liver
7	chr11:34844400-34847800	Enhancers	Brain Angular Gyrus	brain
8	chr11:34844600-34844800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:34844600-34846400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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