Variant report

Variant	rs10160732
Chromosome Location	chr11:36682774-36682775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1039205	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1056403	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10742376	0.81[ASN][1000 genomes]
rs10836573	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1498337	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1566245	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3740955	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4756332	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs728875	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36650600-36687000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:36651000-36684000	Weak transcription	HSMMtube	muscle
3	chr11:36653800-36684400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:36660800-36685800	Weak transcription	Fetal Stomach	stomach
5	chr11:36666800-36692800	Weak transcription	Fetal Heart	heart
6	chr11:36668000-36683800	Weak transcription	Brain Germinal Matrix	brain
7	chr11:36669800-36685600	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:36670600-36682800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:36670800-36683600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:36671000-36683800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:36679400-36682800	Weak transcription	Brain Angular Gyrus	brain
12	chr11:36679600-36687000	Weak transcription	K562	blood
13	chr11:36681200-36683000	Weak transcription	Thymus	Thymus
14	chr11:36681200-36683600	Weak transcription	Fetal Kidney	kidney
15	chr11:36681200-36683600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:36681200-36683800	Weak transcription	Left Ventricle	heart
17	chr11:36681200-36683800	Weak transcription	Ovary	ovary
18	chr11:36681200-36684600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:36681200-36684800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:36681200-36685600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:36681400-36683800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:36681600-36682800	Weak transcription	Dnd41	blood
23	chr11:36682000-36683600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:36682000-36684200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:36682000-36684600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:36682000-36686200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:36682200-36682800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:36682200-36683600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:36682200-36683800	Weak transcription	Adipose Nuclei	Adipose
30	chr11:36682200-36684200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:36682200-36684400	Weak transcription	Fetal Lung	lung
32	chr11:36682200-36687600	Weak transcription	Liver	Liver
33	chr11:36682400-36683800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:36682600-36684800	Weak transcription	Brain Anterior Caudate	brain

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