Variant report

Variant	rs3740955
Chromosome Location	chr11:36595600-36595601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36593184..36595946-chr11:36621814..36623682,2	MCF-7	breast:
2	chr11:36577777..36580752-chr11:36593983..36595906,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10160732	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1039205	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1056403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10768219	0.94[CHB][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10836573	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1498337	0.90[ASW][hapmap];0.92[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1566245	0.91[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4294539	0.87[JPT][hapmap]
rs4756332	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6484869	0.82[JPT][hapmap]
rs7107222	0.85[JPT][hapmap]
rs7123291	0.82[JPT][hapmap]
rs728875	0.91[ASW][hapmap];0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36586800-36599400	Weak transcription	Liver	Liver
2	chr11:36586800-36600200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:36589800-36600800	Transcr. at gene 5' and 3'	Dnd41	blood
4	chr11:36590200-36596200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:36593200-36597600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:36593200-36600800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
7	chr11:36593600-36598800	Weak transcription	Gastric	stomach
8	chr11:36594800-36598400	Transcr. at gene 5' and 3'	Thymus	Thymus
9	chr11:36595000-36595600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:36595000-36596400	Strong transcription	Pancreas	Pancrea
11	chr11:36595000-36596600	Strong transcription	Left Ventricle	heart
12	chr11:36595000-36597400	Strong transcription	Spleen	Spleen
13	chr11:36595200-36595800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr11:36595200-36595800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:36595200-36595800	ZNF genes & repeats	Aorta	Aorta
16	chr11:36595200-36595800	Strong transcription	Right Ventricle	heart
17	chr11:36595200-36596400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:36595200-36597000	Strong transcription	Fetal Intestine Small	intestine
19	chr11:36595200-36598200	Weak transcription	Fetal Intestine Large	intestine
20	chr11:36595400-36595800	ZNF genes & repeats	Lung	lung
21	chr11:36595600-36597600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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