Variant report

Variant	rs10768219
Chromosome Location	chr11:36622471-36622472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36593184..36595946-chr11:36621814..36623682,2	MCF-7	breast:
2	chr11:36587708..36589968-chr11:36622211..36624762,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166349	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1056403	0.94[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs10742376	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10768221	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10836573	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10836588	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1498337	0.94[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs1566245	0.94[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.80[TSI][hapmap];0.82[ASN][1000 genomes]
rs1863398	0.82[ASW][hapmap]
rs3740955	0.94[CHB][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4294539	0.92[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4756332	0.81[ASN][1000 genomes]
rs6484869	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7107222	1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7121785	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7123291	0.86[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs728875	0.94[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.82[ASN][1000 genomes]
rs957162	0.91[CHD][hapmap];0.94[JPT][hapmap]
rs9666500	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9787840	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9787843	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs994182	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1850719	chr11:36616867-36657272	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36616600-36640400	Weak transcription	Esophagus	oesophagus
2	chr11:36616600-36657000	Weak transcription	Left Ventricle	heart
3	chr11:36616800-36639600	Weak transcription	Aorta	Aorta
4	chr11:36617200-36626800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:36617200-36630000	Weak transcription	HSMMtube	muscle
6	chr11:36617200-36640000	Weak transcription	Fetal Stomach	stomach
7	chr11:36617400-36632400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:36618000-36623400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:36618000-36640400	Weak transcription	Primary T cells from cord blood	blood
10	chr11:36621000-36635400	Enhancers	Dnd41	blood
11	chr11:36622000-36622600	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:36622000-36625000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:36622000-36625600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:36622200-36622600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr11:36622200-36624200	Active TSS	Thymus	Thymus
16	chr11:36622400-36622600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr11:36622400-36622600	Flanking Active TSS	Fetal Thymus	thymus
18	chr11:36622400-36624000	Enhancers	Primary monocytes fromperipheralblood	blood

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