Variant report

Variant	rs10160792
Chromosome Location	chr11:65667149-65667150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65549748..65553562-chr11:65663861..65667886,4	K562	blood:
2	chr11:65546756..65549287-chr11:65665686..65670324,5	K562	blood:
3	chr11:65381231..65384129-chr11:65666512..65668944,3	K562	blood:
4	chr11:65343176..65345868-chr11:65665917..65668139,2	K562	blood:
5	chr11:65546164..65550034-chr11:65665205..65668429,3	MCF-7	breast:
6	chr11:65666218..65668935-chr11:65825625..65827818,2	K562	blood:
7	chr11:65666594..65669601-chr11:65818513..65821111,3	K562	blood:
8	chr11:65666258..65667865-chr11:65755112..65756904,2	MCF-7	breast:
9	chr11:65666389..65668880-chr11:66033377..66036542,3	K562	blood:
10	chr11:65477813..65481606-chr11:65666107..65669263,4	K562	blood:
11	chr11:65381788..65384683-chr11:65666301..65668827,4	K562	blood:
12	chr11:65665429..65670947-chr11:65725068..65731705,14	MCF-7	breast:
13	chr11:65188738..65191479-chr11:65666779..65669038,2	K562	blood:
14	chr11:65339875..65342450-chr11:65666434..65669137,3	K562	blood:
15	chr11:65667017..65667753-chr7:100026328..100026935,2	Hela-S3	cervix:
16	chr11:65342557..65345868-chr11:65665917..65668139,3	K562	blood:
17	chr11:65622512..65626950-chr11:65664131..65668520,8	MCF-7	breast:
18	chr11:65546756..65549287-chr11:65665395..65667925,3	K562	blood:
19	chr11:65665582..65668888-chr11:65835107..65838015,3	K562	blood:
20	chr11:65666788..65667405-chr9:71737195..71738062,2	Hela-S3	cervix:
21	chr11:65263558..65266439-chr11:65666909..65668740,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000172732	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000174903	Chromatin interaction
ENSG00000254470	Chromatin interaction
ENSG00000255038	Chromatin interaction
ENSG00000197136	Chromatin interaction
ENSG00000175827	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000173442	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000254762	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000176973	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000078487	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1058068	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1151523	0.89[EUR][1000 genomes]
rs500161	0.82[AMR][1000 genomes]
rs526631	0.88[EUR][1000 genomes]
rs556872	0.86[EUR][1000 genomes]
rs574586	0.82[AMR][1000 genomes]
rs575479	0.82[AMR][1000 genomes]
rs589253	0.82[AMR][1000 genomes]
rs590871	0.90[EUR][1000 genomes]
rs634534	0.87[EUR][1000 genomes]
rs637571	0.81[EUR][1000 genomes]
rs653914	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs669371	0.90[EUR][1000 genomes]
rs677029	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs689274	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
11	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
12	nsv39194	chr11:65665530-65672457	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65662800-65667400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:65663000-65667800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:65664800-65668200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:65665400-65668200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:65665400-65668200	Active TSS	A549	lung
6	chr11:65665400-65668200	Active TSS	HSMMtube	muscle
7	chr11:65665400-65668600	Active TSS	NH-A	brain
8	chr11:65665600-65667400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:65665800-65667600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:65666000-65667600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr11:65666000-65667800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
12	chr11:65666000-65668200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:65666000-65668400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:65666000-65668400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:65666000-65668400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:65666200-65667200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:65666200-65667200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr11:65666200-65667600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:65666200-65667600	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr11:65666200-65667800	Active TSS	NHDF-Ad	bronchial
21	chr11:65666200-65668200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr11:65666200-65668400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:65666200-65668400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:65666200-65668400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr11:65666200-65668400	Active TSS	HSMM	muscle
26	chr11:65666400-65667200	Bivalent/Poised TSS	HepG2	liver
27	chr11:65666400-65667400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
28	chr11:65666400-65667400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:65666400-65667600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr11:65666400-65667600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
31	chr11:65666400-65667800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr11:65666400-65667800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
33	chr11:65666400-65668000	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr11:65666400-65668200	Active TSS	Brain Substantia Nigra	brain
35	chr11:65666400-65668200	Flanking Bivalent TSS/Enh	Dnd41	blood
36	chr11:65666400-65668200	Active TSS	HUVEC	blood vessel
37	chr11:65666400-65668400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
38	chr11:65666400-65668400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:65666400-65668400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:65666400-65668400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
41	chr11:65666400-65668400	Active TSS	Osteobl	bone
42	chr11:65666400-65668600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr11:65666600-65667200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:65666600-65667200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:65666600-65667200	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:65666600-65667200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
47	chr11:65666600-65667200	Active TSS	Ovary	ovary
48	chr11:65666600-65667200	Bivalent/Poised TSS	Psoas Muscle	Psoas
49	chr11:65666600-65667400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:65666600-65667400	Flanking Active TSS	Placenta Amnion	Placenta Amnion

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