Variant report

Variant	rs1151523
Chromosome Location	chr11:65665200-65665201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65549748..65553562-chr11:65663861..65667886,4	K562	blood:
2	chr11:65664746..65666808-chr11:117102537..117104332,2	K562	blood:
3	chr11:65663912..65665764-chr11:65680753..65683444,3	MCF-7	breast:
4	chr11:65622512..65626950-chr11:65664131..65668520,8	MCF-7	breast:
5	chr11:65663659..65665930-chr11:65787227..65789990,2	K562	blood:
6	chr11:65664149..65667009-chr11:65727270..65730620,4	MCF-7	breast:
7	chr11:65663723..65666241-chr21:46495274..46498090,2	K562	blood:

Variant related genes	Relation type
ENSG00000172732	Chromatin interaction
ENSG00000160613	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000167257	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000175294	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10160792	0.89[EUR][1000 genomes]
rs1058068	0.94[EUR][1000 genomes]
rs12361552	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs526631	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs552130	0.83[GIH][hapmap]
rs556872	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs589253	0.85[GIH][hapmap];0.85[MEX][hapmap]
rs590318	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs590871	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs593525	0.83[GIH][hapmap]
rs617791	0.82[CEU][hapmap];0.93[GIH][hapmap]
rs61893932	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs624273	0.83[CHD][hapmap];0.83[GIH][hapmap]
rs634534	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs637571	0.84[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs653914	0.89[CEU][hapmap];0.89[GIH][hapmap];0.80[MEX][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes]
rs669371	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs674363	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs677029	0.89[CEU][hapmap];0.91[GIH][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs688862	0.83[GIH][hapmap]
rs689274	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs694156	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
11	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs1151523	LRRN4CL	cis	cerebellum	SCAN
rs1151523	CARNS1	cis	cerebellum	SCAN
rs1151523	EFEMP2	cis	cerebellum	SCAN
rs1151523	PCNXL3	cis	parietal	SCAN
rs1151523	SNX32	cis	cerebellum	SCAN
rs1151523	KCNK4	cis	cerebellum	SCAN
rs1151523	EIF1AD	cis	parietal	SCAN
rs1151523	PRDX5	cis	cerebellum	SCAN
rs1151523	RAB1B	cis	cerebellum	SCAN
rs1151523	FADS3	cis	parietal	SCAN
rs1151523	PACS1	cis	parietal	SCAN
rs1151523	SNX32	cis	parietal	SCAN

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65659800-65665800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:65659800-65665800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:65660200-65665800	Genic enhancers	K562	blood
4	chr11:65660600-65666600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:65660600-65666600	Weak transcription	Pancreas	Pancrea
6	chr11:65661200-65666600	Weak transcription	Small Intestine	intestine
7	chr11:65661400-65666400	Weak transcription	Stomach Mucosa	stomach
8	chr11:65661800-65666600	Weak transcription	Right Atrium	heart
9	chr11:65662000-65665200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:65662000-65665800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:65662000-65666000	Weak transcription	Adipose Nuclei	Adipose
12	chr11:65662000-65666000	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:65662000-65666000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:65662000-65666400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:65662000-65666400	Weak transcription	Brain Anterior Caudate	brain
16	chr11:65662000-65666400	Weak transcription	Esophagus	oesophagus
17	chr11:65662000-65666400	Weak transcription	Placenta	Placenta
18	chr11:65662000-65666400	Weak transcription	Spleen	Spleen
19	chr11:65662000-65666600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:65662200-65665800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:65662200-65665800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:65662200-65666200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:65662200-65666200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:65662200-65666200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:65662200-65666400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr11:65662400-65665800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr11:65662600-65665800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:65662800-65665600	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
29	chr11:65662800-65666600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:65662800-65666800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
31	chr11:65662800-65667400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:65663000-65665400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:65663000-65665600	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
34	chr11:65663000-65666000	Genic enhancers	Hela-S3	cervix
35	chr11:65663000-65666200	Transcr. at gene 5' and 3'	HSMM	muscle
36	chr11:65663000-65666200	Transcr. at gene 5' and 3'	Osteobl	bone
37	chr11:65663000-65666600	Transcr. at gene 5' and 3'	NHEK	skin
38	chr11:65663000-65666800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:65663000-65666800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:65663000-65667800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:65663200-65666200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:65663200-65666600	Transcr. at gene 5' and 3'	HMEC	breast
43	chr11:65663200-65666600	Transcr. at gene 5' and 3'	NHLF	lung
44	chr11:65663400-65665800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:65663800-65665800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:65664000-65665800	Weak transcription	Lung	lung
47	chr11:65664200-65665200	Weak transcription	HepG2	liver
48	chr11:65664200-65665400	Transcr. at gene 5' and 3'	NH-A	brain
49	chr11:65664400-65666000	Weak transcription	Right Ventricle	heart
50	chr11:65664600-65665600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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