Variant report

Variant	rs61893932
Chromosome Location	chr11:65691381-65691382
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65683165..65691632-chr11:65723620..65730701,28	MCF-7	breast:
2	chr11:65690547..65693010-chr11:65707576..65709212,2	MCF-7	breast:
3	chr11:65690883..65692815-chr11:65804692..65807223,2	K562	blood:
4	chr11:65691030..65693972-chr11:65728141..65730405,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175467	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1151523	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1192168	0.80[EUR][1000 genomes]
rs12361552	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs500161	0.85[EUR][1000 genomes]
rs526631	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs531612	0.82[EUR][1000 genomes]
rs556872	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs574586	0.85[EUR][1000 genomes]
rs575479	0.87[EUR][1000 genomes]
rs589253	0.85[EUR][1000 genomes]
rs590318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs590871	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs593525	0.80[EUR][1000 genomes]
rs617791	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs624273	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs634534	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs653236	0.87[EUR][1000 genomes]
rs669371	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs674363	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs688862	0.80[EUR][1000 genomes]
rs689274	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs694156	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
6	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
7	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
8	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
9	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
10	esv3444925	chr11:65687425-65714023	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv972039	chr11:65688555-65692860	Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65687800-65699800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:65688000-65692400	Weak transcription	Fetal Kidney	kidney
3	chr11:65688200-65695200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:65688400-65694600	Weak transcription	K562	blood
5	chr11:65688600-65691600	Weak transcription	Psoas Muscle	Psoas
6	chr11:65688600-65692200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:65688600-65692400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:65688600-65692800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:65688600-65692800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:65688600-65692800	Strong transcription	Fetal Intestine Small	intestine
11	chr11:65688600-65693400	Strong transcription	Placenta	Placenta
12	chr11:65688600-65695000	Weak transcription	HepG2	liver
13	chr11:65688600-65699000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:65688800-65691400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:65688800-65692600	Strong transcription	Fetal Thymus	thymus
16	chr11:65688800-65692800	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:65688800-65692800	Strong transcription	Fetal Muscle Leg	muscle
18	chr11:65688800-65693000	Strong transcription	Fetal Muscle Trunk	muscle
19	chr11:65688800-65693200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:65688800-65693200	Strong transcription	Thymus	Thymus
21	chr11:65688800-65693400	Strong transcription	Fetal Brain Female	brain
22	chr11:65688800-65693600	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr11:65688800-65694000	Strong transcription	Fetal Stomach	stomach
24	chr11:65688800-65694000	Strong transcription	Osteobl	bone
25	chr11:65688800-65694600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:65688800-65695200	Weak transcription	Small Intestine	intestine
27	chr11:65688800-65695200	Weak transcription	Stomach Mucosa	stomach
28	chr11:65688800-65715000	Weak transcription	Right Atrium	heart
29	chr11:65689000-65692200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:65689000-65693400	Strong transcription	Brain Germinal Matrix	brain
31	chr11:65689000-65693800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:65689000-65694000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:65689400-65691400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:65689400-65691400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:65689400-65692800	Strong transcription	Spleen	Spleen
36	chr11:65689600-65691400	Strong transcription	Primary B cells from cord blood	blood
37	chr11:65689600-65691400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:65689600-65692600	Strong transcription	Fetal Lung	lung
39	chr11:65689600-65693000	Strong transcription	Primary T cells from cord blood	blood
40	chr11:65689600-65693200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:65689800-65692000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:65689800-65692600	Strong transcription	NHLF	lung
43	chr11:65690000-65691400	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:65690000-65691800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:65690000-65692600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:65690200-65691400	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:65690200-65691800	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr11:65690400-65693200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:65690400-65694000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:65690400-65695000	Weak transcription	Aorta	Aorta

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