Variant report

Variant	rs12361552
Chromosome Location	chr11:65701204-65701205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65695024..65697839-chr11:65700291..65702313,2	MCF-7	breast:
2	chr11:65699308..65702229-chr11:65725345..65726917,2	MCF-7	breast:
3	chr11:65657110..65659660-chr11:65699000..65702275,4	MCF-7	breast:
4	chr11:65683260..65685556-chr11:65700127..65702595,2	MCF-7	breast:
5	chr11:65700259..65702613-chr11:65727526..65729683,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175602	Chromatin interaction
ENSG00000175467	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1151505	0.80[EUR][1000 genomes]
rs1151523	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs1192168	0.82[EUR][1000 genomes]
rs1308733	0.80[EUR][1000 genomes]
rs500161	0.87[EUR][1000 genomes]
rs526631	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs531612	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs552130	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs574586	0.87[EUR][1000 genomes]
rs575479	0.88[EUR][1000 genomes]
rs589253	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs590318	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs590871	0.81[AMR][1000 genomes]
rs593525	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs617791	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61893932	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs624273	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs634534	0.86[CEU][hapmap]
rs653236	0.88[EUR][1000 genomes]
rs669371	0.82[CEU][hapmap]
rs674363	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs688862	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs689274	0.82[AMR][1000 genomes]
rs694156	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
6	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
7	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
8	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
9	esv3444925	chr11:65687425-65714023	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65688800-65715000	Weak transcription	Right Atrium	heart
2	chr11:65690400-65702000	Weak transcription	Fetal Brain Male	brain
3	chr11:65690600-65705000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:65691200-65708600	Weak transcription	HSMM	muscle
5	chr11:65692600-65701600	Weak transcription	NHLF	lung
6	chr11:65693600-65701600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:65694000-65708200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:65695800-65705000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:65696600-65705000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:65699000-65702600	Enhancers	K562	blood
11	chr11:65699800-65703600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:65699800-65708600	Weak transcription	GM12878-XiMat	blood
13	chr11:65699800-65712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:65700000-65705000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:65700000-65705000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:65700000-65712600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:65700200-65701600	Weak transcription	Osteobl	bone
18	chr11:65700200-65705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:65700400-65707800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:65700400-65708600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:65700600-65702000	Weak transcription	Fetal Lung	lung
22	chr11:65700600-65702200	Weak transcription	HepG2	liver
23	chr11:65700600-65705000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:65700600-65705000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:65700800-65702600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:65700800-65705000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:65701000-65702000	Weak transcription	Placenta	Placenta

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