Variant report

Variant	rs10160797
Chromosome Location	chr11:57284715-57284716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr11:57284285-57284716	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:57282154..57283762-chr11:57284107..57286445,2	K562	blood:
2	chr11:57260706..57264705-chr11:57283186..57286169,4	K562	blood:
3	chr11:57264825..57270955-chr11:57280277..57284813,10	K562	blood:

Variant related genes	Relation type
SLC43A1	TF binding region
ENSG00000149150	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11229050	1.00[LWK][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap]
rs12282980	1.00[AMR][1000 genomes]
rs2926663	1.00[AMR][1000 genomes]
rs2956983	1.00[AMR][1000 genomes]
rs2969941	1.00[AMR][1000 genomes]
rs2969942	1.00[AMR][1000 genomes]
rs3016261	1.00[AMR][1000 genomes]
rs3016262	1.00[AMR][1000 genomes]
rs3016263	1.00[AMR][1000 genomes]
rs3016264	1.00[AMR][1000 genomes]
rs3016293	1.00[AMR][1000 genomes]
rs7127878	1.00[AMR][1000 genomes]
rs7939745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57283400-57297400	Weak transcription	Gastric	stomach
2	chr11:57283600-57292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:57283600-57292400	Weak transcription	Aorta	Aorta
4	chr11:57283600-57295200	Weak transcription	Lung	lung
5	chr11:57283600-57296000	Weak transcription	Spleen	Spleen
6	chr11:57283600-57296200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:57283800-57284800	Enhancers	Primary hematopoietic stem cells	blood
8	chr11:57283800-57289600	Weak transcription	K562	blood
9	chr11:57283800-57291200	Weak transcription	Adipose Nuclei	Adipose
10	chr11:57283800-57292200	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:57283800-57292200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:57283800-57292200	Weak transcription	Brain Substantia Nigra	brain
13	chr11:57283800-57292200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:57283800-57292400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:57283800-57292400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:57283800-57292400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:57283800-57293800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:57283800-57293800	Weak transcription	HUVEC	blood vessel
19	chr11:57283800-57294400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr11:57283800-57294400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:57283800-57294600	Weak transcription	Primary T cells from cord blood	blood
22	chr11:57283800-57295000	Weak transcription	NHLF	lung
23	chr11:57283800-57295000	Weak transcription	Osteobl	bone
24	chr11:57283800-57295200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:57283800-57295200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:57283800-57295200	Weak transcription	Brain Anterior Caudate	brain
27	chr11:57283800-57295200	Weak transcription	Fetal Intestine Small	intestine
28	chr11:57283800-57295200	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:57283800-57295800	Weak transcription	Fetal Intestine Large	intestine
30	chr11:57283800-57296000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:57283800-57296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:57283800-57296000	Weak transcription	Left Ventricle	heart
33	chr11:57283800-57296200	Weak transcription	HSMM	muscle
34	chr11:57283800-57296400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:57283800-57296600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:57283800-57296600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:57283800-57297000	Weak transcription	Brain Angular Gyrus	brain
38	chr11:57283800-57297200	Weak transcription	Fetal Lung	lung
39	chr11:57283800-57297200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:57283800-57297200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:57283800-57297200	Weak transcription	Right Atrium	heart
42	chr11:57283800-57297200	Weak transcription	NH-A	brain
43	chr11:57283800-57297400	Weak transcription	Colonic Mucosa	Colon
44	chr11:57283800-57297400	Weak transcription	HSMMtube	muscle
45	chr11:57284000-57292200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:57284000-57292200	Weak transcription	A549	lung
47	chr11:57284000-57292400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:57284000-57294000	Weak transcription	GM12878-XiMat	blood
49	chr11:57284000-57294200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr11:57284000-57294600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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