Variant report

Variant	rs7127878
Chromosome Location	chr11:57223228-57223229
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10160797	1.00[AMR][1000 genomes]
rs12282980	1.00[AMR][1000 genomes]
rs2926663	1.00[AMR][1000 genomes]
rs2956983	1.00[AMR][1000 genomes]
rs2969941	1.00[AMR][1000 genomes]
rs2969942	1.00[AMR][1000 genomes]
rs3016261	1.00[AMR][1000 genomes]
rs3016262	1.00[AMR][1000 genomes]
rs3016263	1.00[AMR][1000 genomes]
rs3016264	1.00[AMR][1000 genomes]
rs3016293	1.00[AMR][1000 genomes]
rs7939745	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57208400-57224600	Weak transcription	Lung	lung
2	chr11:57214000-57224600	Weak transcription	K562	blood
3	chr11:57221600-57223400	Enhancers	Liver	Liver
4	chr11:57221600-57224600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:57221600-57225200	Weak transcription	Gastric	stomach
6	chr11:57221800-57224400	Weak transcription	A549	lung
7	chr11:57221800-57224600	Weak transcription	Pancreas	Pancrea
8	chr11:57222400-57224600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:57222600-57224400	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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