Variant report

Variant	rs10160830
Chromosome Location	chr11:85866783-85866784
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85860013..85862994-chr11:85864825..85867094,3	MCF-7	breast:
2	chr11:85864981..85867412-chr11:85905656..85909447,3	K562	blood:
3	chr11:85864815..85867737-chr11:85873102..85874804,3	MCF-7	breast:
4	chr11:85778606..85781655-chr11:85865896..85868679,3	K562	blood:
5	chr11:85862649..85865234-chr11:85865987..85868104,3	K562	blood:

Variant related genes	Relation type
ENSG00000254502	Chromatin interaction
ENSG00000200877	Chromatin interaction
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10160337	1.00[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292036	0.85[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17818226	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3889743	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs56205977	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85862600-85867400	Weak transcription	Pancreas	Pancrea
2	chr11:85863000-85867600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:85863400-85867400	Weak transcription	Spleen	Spleen
4	chr11:85863400-85870400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:85863400-85870600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:85863400-85872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:85863400-85873000	Weak transcription	Lung	lung
8	chr11:85863600-85867000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:85863600-85867000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr11:85863600-85867400	Weak transcription	Left Ventricle	heart
11	chr11:85863600-85867400	Weak transcription	Right Atrium	heart
12	chr11:85863600-85867400	Weak transcription	Right Ventricle	heart
13	chr11:85863600-85869400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:85863600-85869600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:85863600-85871200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:85863800-85867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:85863800-85867400	Weak transcription	Placenta	Placenta
18	chr11:85863800-85867400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:85863800-85871000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:85864000-85867200	Weak transcription	Adipose Nuclei	Adipose
21	chr11:85864000-85867400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:85864000-85868800	Weak transcription	Hela-S3	cervix
23	chr11:85864200-85867200	Weak transcription	Fetal Stomach	stomach
24	chr11:85864200-85867400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:85864200-85870400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:85864200-85870800	Weak transcription	HSMM	muscle
27	chr11:85864200-85871600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:85864200-85871600	Weak transcription	Brain Angular Gyrus	brain
29	chr11:85864200-85871600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:85864200-85872000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:85864400-85867400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:85864400-85867400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:85864400-85871600	Weak transcription	Brain Anterior Caudate	brain
34	chr11:85864600-85870200	Weak transcription	Brain Substantia Nigra	brain
35	chr11:85864600-85870600	Weak transcription	Fetal Lung	lung
36	chr11:85864800-85867200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:85865000-85867400	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:85865200-85867400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:85865200-85870600	Weak transcription	Fetal Intestine Large	intestine
40	chr11:85865200-85871000	Weak transcription	Small Intestine	intestine
41	chr11:85865200-85871200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:85865200-85872400	Weak transcription	Liver	Liver
43	chr11:85865400-85874400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:85865800-85867400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:85865800-85868000	Enhancers	NHEK	skin
46	chr11:85866000-85867800	Enhancers	HMEC	breast
47	chr11:85866000-85868000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:85866000-85869600	Enhancers	K562	blood
49	chr11:85866200-85867800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:85866400-85870200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links