Variant report

Variant	rs56205977
Chromosome Location	chr11:85849054-85849055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85848367..85849977-chr11:85884003..85885700,2	K562	blood:
2	chr11:85844022..85845904-chr11:85847037..85849621,3	K562	blood:
3	chr11:85810855..85813680-chr11:85847452..85850001,2	K562	blood:
4	chr11:85848837..85850874-chr17:80769880..80771461,2	MCF-7	breast:
5	chr11:85844772..85849892-chr11:85856973..85861809,6	K562	blood:
6	chr11:85846668..85849486-chr11:85860309..85862549,2	K562	blood:
7	chr11:85840328..85842896-chr11:85848812..85850982,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10160337	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10160830	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292036	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17818226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72959929	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85845200-85858600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:85845400-85849400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:85845800-85859800	Weak transcription	Aorta	Aorta
4	chr11:85846000-85851600	Weak transcription	Right Atrium	heart
5	chr11:85846400-85849800	Weak transcription	Liver	Liver
6	chr11:85846400-85851600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:85846400-85862200	Weak transcription	Psoas Muscle	Psoas
8	chr11:85846800-85849200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:85847400-85849400	Weak transcription	Placenta	Placenta
10	chr11:85847400-85855600	Weak transcription	Stomach Mucosa	stomach
11	chr11:85848000-85849600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:85848000-85849800	Weak transcription	Adipose Nuclei	Adipose
13	chr11:85848000-85849800	Weak transcription	Osteobl	bone
14	chr11:85848000-85851400	Weak transcription	Brain Angular Gyrus	brain
15	chr11:85848000-85851400	Weak transcription	Brain Anterior Caudate	brain
16	chr11:85848000-85851400	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:85848000-85851400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:85848000-85851400	Weak transcription	Brain Substantia Nigra	brain
19	chr11:85848000-85851600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:85848000-85852600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:85848000-85861200	Weak transcription	Small Intestine	intestine
22	chr11:85848000-85861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:85848200-85849400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:85848200-85849400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:85848200-85849400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:85848200-85849800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:85848200-85849800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:85848200-85849800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:85848200-85854400	Weak transcription	Fetal Intestine Large	intestine
30	chr11:85848600-85849800	Weak transcription	K562	blood
31	chr11:85849000-85849800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:85849000-85858600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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