Variant report

Variant	rs10160991
Chromosome Location	chr12:105357701-105357702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10161522	0.84[ASN][1000 genomes]
rs11112276	0.84[ASN][1000 genomes]
rs11112277	0.84[ASN][1000 genomes]
rs11112279	0.84[ASN][1000 genomes]
rs11112283	0.80[ASN][1000 genomes]
rs11112307	0.80[ASN][1000 genomes]
rs11503466	0.80[ASN][1000 genomes]
rs12299936	0.81[ASN][1000 genomes]
rs12300005	0.80[ASN][1000 genomes]
rs12300010	0.84[ASN][1000 genomes]
rs12301432	0.80[ASN][1000 genomes]
rs12301850	0.84[ASN][1000 genomes]
rs12306191	0.81[ASN][1000 genomes]
rs12306443	0.84[ASN][1000 genomes]
rs12306848	0.84[ASN][1000 genomes]
rs12308952	0.82[ASN][1000 genomes]
rs12310790	0.80[ASN][1000 genomes]
rs12313077	0.84[ASN][1000 genomes]
rs12314995	0.84[ASN][1000 genomes]
rs12315975	0.84[ASN][1000 genomes]
rs12315983	0.84[ASN][1000 genomes]
rs12316001	0.80[ASN][1000 genomes]
rs12320024	0.84[ASN][1000 genomes]
rs12320195	0.84[ASN][1000 genomes]
rs12320880	0.80[ASN][1000 genomes]
rs12321224	0.82[ASN][1000 genomes]
rs12321226	0.82[ASN][1000 genomes]
rs12321381	0.84[ASN][1000 genomes]
rs35879768	0.84[ASN][1000 genomes]
rs4267155	0.84[ASN][1000 genomes]
rs4268581	0.84[ASN][1000 genomes]
rs4393405	0.82[ASN][1000 genomes]
rs4451800	0.84[ASN][1000 genomes]
rs7964906	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105353800-105358000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:105353800-105358800	Weak transcription	GM12878-XiMat	blood
3	chr12:105356600-105359400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr12:105357000-105358800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:105357400-105358800	Enhancers	Fetal Brain Male	brain
6	chr12:105357400-105359000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:105357600-105358000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr12:105357600-105358200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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