Variant report

Variant	rs12313077
Chromosome Location	chr12:105357917-105357918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105354302..105359267-chr12:105378860..105381853,4	MCF-7	breast:
2	chr12:105351015..105355585-chr12:105357288..105360893,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136052	Chromatin interaction
ENSG00000151131	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10160991	0.84[ASN][1000 genomes]
rs10161522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10507186	0.91[EUR][1000 genomes]
rs10507187	0.91[EUR][1000 genomes]
rs10507188	0.88[EUR][1000 genomes]
rs11112276	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112277	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112279	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112283	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11112303	0.91[EUR][1000 genomes]
rs11112307	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11503466	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12296144	0.97[EUR][1000 genomes]
rs12299385	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12299936	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12300005	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12300010	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12301432	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12301850	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12306191	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12306443	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12306848	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12308952	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12310790	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12314995	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12315975	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12315983	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12316001	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12319632	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12320024	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12320195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12320880	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12321224	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12321226	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12321381	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036439	0.85[EUR][1000 genomes]
rs17036463	0.91[EUR][1000 genomes]
rs17036494	0.91[EUR][1000 genomes]
rs17036505	0.91[EUR][1000 genomes]
rs17036509	0.91[EUR][1000 genomes]
rs17036534	0.91[EUR][1000 genomes]
rs17036542	0.91[EUR][1000 genomes]
rs17036549	0.91[EUR][1000 genomes]
rs17036558	0.91[EUR][1000 genomes]
rs17041531	0.94[EUR][1000 genomes]
rs35879768	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812795	0.91[EUR][1000 genomes]
rs3935722	0.94[EUR][1000 genomes]
rs4077312	0.91[EUR][1000 genomes]
rs4267155	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4268581	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4357778	0.94[EUR][1000 genomes]
rs4393405	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4451800	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58005679	0.94[EUR][1000 genomes]
rs58447363	0.94[EUR][1000 genomes]
rs58483223	0.91[EUR][1000 genomes]
rs60057011	0.85[EUR][1000 genomes]
rs60096703	0.91[EUR][1000 genomes]
rs60310033	0.85[EUR][1000 genomes]
rs60809012	0.85[EUR][1000 genomes]
rs60956548	0.94[EUR][1000 genomes]
rs61638859	0.91[EUR][1000 genomes]
rs7131977	0.91[EUR][1000 genomes]
rs73387265	0.91[EUR][1000 genomes]
rs7964906	0.98[ASN][1000 genomes]
rs7970504	0.91[EUR][1000 genomes]
rs9738733	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105353800-105358000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:105353800-105358800	Weak transcription	GM12878-XiMat	blood
3	chr12:105356600-105359400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr12:105357000-105358800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:105357400-105358800	Enhancers	Fetal Brain Male	brain
6	chr12:105357400-105359000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:105357600-105358000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr12:105357600-105358200	Enhancers	Fetal Brain Female	brain

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