Variant report

Variant	rs17036558
Chromosome Location	chr12:105345306-105345307
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105343851..105348812-chr12:105350003..105354386,8	MCF-7	breast:
2	chr12:105344565..105347442-chr12:105349621..105353002,3	K562	blood:

Variant related genes	Relation type
ENSG00000136052	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10161522	0.91[EUR][1000 genomes]
rs10507186	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10507187	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10507188	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11112276	0.91[EUR][1000 genomes]
rs11112277	0.91[EUR][1000 genomes]
rs11112279	0.91[EUR][1000 genomes]
rs11112283	0.86[EUR][1000 genomes]
rs11112303	0.83[EUR][1000 genomes]
rs11112307	0.85[EUR][1000 genomes]
rs11503466	0.85[EUR][1000 genomes]
rs12296144	0.88[EUR][1000 genomes]
rs12299385	0.85[EUR][1000 genomes]
rs12299936	0.91[EUR][1000 genomes]
rs12300005	0.85[EUR][1000 genomes]
rs12301432	0.85[EUR][1000 genomes]
rs12306191	0.91[EUR][1000 genomes]
rs12306443	0.91[EUR][1000 genomes]
rs12308952	0.91[EUR][1000 genomes]
rs12310790	0.85[EUR][1000 genomes]
rs12313077	0.91[EUR][1000 genomes]
rs12314995	0.91[EUR][1000 genomes]
rs12315975	0.91[EUR][1000 genomes]
rs12315983	0.91[EUR][1000 genomes]
rs12316001	0.85[EUR][1000 genomes]
rs12319632	0.91[EUR][1000 genomes]
rs12320024	0.91[EUR][1000 genomes]
rs12320195	0.91[EUR][1000 genomes]
rs12320880	0.91[EUR][1000 genomes]
rs12321224	0.91[EUR][1000 genomes]
rs12321226	0.91[EUR][1000 genomes]
rs12321381	0.91[EUR][1000 genomes]
rs17036439	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17036463	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17036494	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17036505	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17036509	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17036534	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17036542	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17036549	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17041531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35879768	0.91[EUR][1000 genomes]
rs3812795	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3935722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4077312	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4268581	0.91[EUR][1000 genomes]
rs4357778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58005679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58115870	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58447363	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58483223	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60057011	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60096703	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60310033	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60809012	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60956548	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61638859	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7131977	0.83[EUR][1000 genomes]
rs73387265	0.83[EUR][1000 genomes]
rs7970504	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9738733	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105333200-105346200	Weak transcription	HepG2	liver
2	chr12:105338200-105349000	Weak transcription	Pancreas	Pancrea
3	chr12:105338200-105351000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:105338400-105346600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:105342600-105350600	Weak transcription	Adipose Nuclei	Adipose
6	chr12:105342800-105346000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:105342800-105346000	Weak transcription	Small Intestine	intestine
8	chr12:105344200-105346600	Enhancers	Liver	Liver
9	chr12:105345000-105346000	Enhancers	A549	lung
10	chr12:105345200-105345400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr12:105345200-105346200	Enhancers	Osteobl	bone
12	chr12:105345200-105346400	Weak transcription	Stomach Mucosa	stomach
13	chr12:105345200-105346600	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr12:105345200-105346600	Enhancers	Rectal Mucosa Donor 31	rectum

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